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Metadata

Servers Offering this Tool

UseGalaxy.eu (Grep1)

This is a guess, we are not currently checking if that is actually present.

Observed Tool Versions

Within GTN tutorials

• Grep1

EDAM Operations

• operation_3695

EDAM Topics

Relevant Tutorials

• Assembly / Making sense of a newly assembled genome
• Climate / Getting your hands-on climate data
• Ecology / RAD-Seq Reference-based data analysis
• Epigenetics / ATAC-Seq data analysis
• Epigenetics / CUT&RUN data analysis
• Evolution / Identifying tuberculosis transmission links: from SNPs to transmission clusters
• Genome Annotation / Identification of AMR genes in an assembled bacterial genome
• Introduction to Galaxy Analyses / NGS data logistics
• Metabolomics / Mass spectrometry imaging: Finding differential analytes
• Microbiome / Clinical Metaproteomics 2: Discovery
• Microbiome / Clinical Metaproteomics 4: Quantitation
• Microbiome / Clinical Metaproteomics 5: Data Interpretation
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short)
• Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• Proteomics / Statistical analysis of DIA data
• Proteomics / DIA Analysis using OpenSwathWorkflow
• Proteomics / Clinical Metaproteomics 2: Discovery
• Proteomics / Clinical Metaproteomics 4: Quantitation
• Proteomics / Clinical Metaproteomics 5: Data Interpretation
• Proteomics / Mass spectrometry imaging: Loading and exploring MSI data
• Proteomics / Label-free data analysis using MaxQuant
• Proteomics / MaxQuant and MSstats for the analysis of label-free data
• Proteomics / metaQuantome 1: Data creation
• Proteomics / Peptide and Protein ID using OpenMS tools
• Proteomics / Peptide and Protein ID using SearchGUI and PeptideShaker
• Proteomics / Peptide and Protein Quantification via Stable Isotope Labelling (SIL)
• Proteomics / Secretome Prediction
• Sequence analysis / Removal of human reads from SARS-CoV-2 sequencing data
• Transcriptomics / Pathway analysis with the MINERVA Platform
• Variant Analysis / Avian influenza viral strain analysis from gene segment sequencing data
• Variant Analysis / Pox virus genome analysis from tiled-amplicon sequencing data
• Variant Analysis / From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• Variant Analysis / Somatic Variant Discovery from WES Data Using Control-FREEC
• Visualisation / Visualisation with Circos