FastQC: Read Quality reports

Metadata

Servers Offering this Tool

UseGalaxy.eu (0.74+galaxy1)

This is a guess, we are not currently checking if that is actually present.

Observed Tool Versions

Within GTN tutorials

• 0.74+galaxy1
• 0.74+galaxy0
• 0.73+galaxy0
• 0.72+galaxy1
• 0.72
• 0.71
• 0.69
• 0.68
• 0.65

EDAM Operations

• operation_0236
• operation_3218
• operation_2238

EDAM Topics

• topic_3168
• topic_3572
• topic_0080

Relevant Tutorials

• Assembly / An Introduction to Genome Assembly
• Assembly / Large genome assembly and polishing
• Assembly / Assembly of metagenomic sequencing data
• Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• Assembly / Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• Assembly / Unicycler Assembly
• Ecology / Metabarcoding/eDNA through Obitools
• Ecology / RAD-Seq de-novo data analysis
• Ecology / RAD-Seq Reference-based data analysis
• Epigenetics / ATAC-Seq data analysis
• Epigenetics / CUT&RUN data analysis
• Epigenetics / Identification of the binding sites of the Estrogen receptor
• Epigenetics / Formation of the Super-Structures on the Inactive X
• Epigenetics / DNA Methylation data analysis
• Epigenetics / Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
• Genome Annotation / CRISPR screen analysis
• Introduction to Galaxy Analyses / A short introduction to Galaxy
• Microbiome / Identification of the micro-organisms in a beer using Nanopore sequencing
• Microbiome / Assembly of metagenomic sequencing data
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short)
• Microbiome / 16S Microbial analysis with Nanopore data
• Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• Sequence analysis / Mapping
• Sequence analysis / Quality and contamination control in bacterial isolate using Illumina MiSeq Data
• Sequence analysis / Quality Control
• Sequence analysis / SARS-CoV-2 Viral Sample Alignment and Variant Visualization
• Single Cell / Pre-processing of 10X Single-Cell ATAC-seq Datasets
• Single Cell / Understanding Barcodes
• Transcriptomics / CLIP-Seq data analysis from pre-processing to motif detection
• Transcriptomics / De novo transcriptome reconstruction with RNA-Seq
• Transcriptomics / Genome-wide alternative splicing analysis
• Transcriptomics / De novo transcriptome assembly, annotation, and differential expression analysis
• Transcriptomics / Pathway analysis with the MINERVA Platform
• Transcriptomics / Whole transcriptome analysis of Arabidopsis thaliana
• Transcriptomics / Reference-based RNA-Seq data analysis
• Transcriptomics / RNA-RNA interactome data analysis
• Transcriptomics / 1: RNA-Seq reads to counts
• Transcriptomics / Differential abundance testing of small RNAs
• Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease
• Variant Analysis / Calling variants in non-diploid systems
• Variant Analysis / Somatic Variant Discovery from WES Data Using Control-FREEC
• Variant Analysis / Identification of somatic and germline variants from tumor and normal sample pairs
• Variant Analysis / M. tuberculosis Variant Analysis