fastp: fast all-in-one preprocessing for FASTQ files

Metadata

Servers Offering this Tool

UseGalaxy.eu (0.23.4+galaxy1)

This is a guess, we are not currently checking if that is actually present.

Observed Tool Versions

Within GTN tutorials

• 0.23.4+galaxy1
• 0.23.4+galaxy0
• 0.23.2+galaxy0
• 0.20.1+galaxy0
• 0.19.5+galaxy1

EDAM Operations

• operation_3192
• operation_3187

EDAM Topics

• topic_0080
• topic_0632

Relevant Tutorials

• Assembly / Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
• Assembly / Large genome assembly and polishing
• Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• Assembly / Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• Introduction to Galaxy Analyses / NGS data logistics
• Introduction to Galaxy Analyses / Very Short Introductions: QC
• Microbiome / Identification of the micro-organisms in a beer using Nanopore sequencing
• Microbiome / 16S Microbial analysis with Nanopore data
• Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• Sequence analysis / Quality and contamination control in bacterial isolate using Illumina MiSeq Data
• Transcriptomics / Genome-wide alternative splicing analysis
• Variant Analysis / Avian influenza viral strain analysis from gene segment sequencing data
• Variant Analysis / Pox virus genome analysis from tiled-amplicon sequencing data
• Variant Analysis / From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• Variant Analysis / M. tuberculosis Variant Analysis