PretextMap: converts SAM or BAM files into genome contact maps

toolshed.g2.bx.psu.edu/repos/iuc/pretext_map/pretext_map/0.1.9+galaxy10.1.9+galaxy1

Metadata

Servers Offering this Tool

UseGalaxy.eu (0.1.9+galaxy1)

This is a guess, we are not currently checking if that is actually present.

Observed Tool Versions

Within GTN tutorials

0.1.9+galaxy1
0.1.9+galaxy0

EDAM Operations

EDAM Topics

Relevant Tutorials

Assembly / ERGA post-assembly QC
Assembly / Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step