snippy: Snippy finds SNPs between a haploid reference genome and your NGS sequence reads.

Metadata

Servers Offering this Tool

UseGalaxy.eu (4.6.0+galaxy0)

This is a guess, we are not currently checking if that is actually present.

Observed Tool Versions

Within GTN tutorials

• 4.6.0+galaxy0
• 3.2

EDAM Operations

• operation_0323
• operation_3227
• operation_0567

EDAM Topics

• topic_0621
• topic_3293
• topic_2885
• topic_0622

Relevant Tutorials

• Evolution / Identifying tuberculosis transmission links: from SNPs to transmission clusters
• Variant Analysis / Microbial Variant Calling
• Variant Analysis / M. tuberculosis Variant Analysis