Cutadapt: Remove adapter sequences from FASTQ/FASTA

Metadata

Servers Offering this Tool

UseGalaxy.eu (4.9+galaxy1)

This is a guess, we are not currently checking if that is actually present.

Observed Tool Versions

Within GTN tutorials

• 4.9+galaxy1
• 4.4+galaxy0
• 4.0+galaxy1
• 4.0+galaxy0
• 3.7+galaxy0
• 3.5+galaxy2
• 3.5+galaxy0
• 3.4+galaxy2
• 3.4+galaxy1
• 1.16.5
• 1.16.3

EDAM Operations

• operation_0231

EDAM Topics

• topic_0632

Relevant Tutorials

• Assembly / Assembly of metagenomic sequencing data
• Assembly / Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
• Contributing to the Galaxy Training Material / Creating a new tutorial
• Epigenetics / ATAC-Seq data analysis
• Epigenetics / CUT&RUN data analysis
• Genome Annotation / CRISPR screen analysis
• Genome Annotation / Essential genes detection with Transposon insertion sequencing
• Microbiome / Assembly of metagenomic sequencing data
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data
• Microbiome / Metatranscriptomics analysis using microbiome RNA-seq data (short)
• Sequence analysis / Quality Control
• Transcriptomics / CLIP-Seq data analysis from pre-processing to motif detection
• Transcriptomics / Pathway analysis with the MINERVA Platform
• Transcriptomics / Reference-based RNA-Seq data analysis
• Transcriptomics / RNA-RNA interactome data analysis
• Transcriptomics / 1: RNA-Seq reads to counts