Assembly
Learn all about Genome assembly. Start with the tutorial at your own pace. If you need support contact us via the Slack Channel gta_assembly.
| Organisers(s) |
 
Delphine Lariviere
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| Instructor(s) |
Anna Syme
Björn Grüning
Clea Siguret
Delphine Lariviere
Gareth Price
Igor Makunin
Michael Schatz
Saim Momin
Nguyen Vo Minh Trung
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Need help with these tutorials?
Open Slack support channel for this track: comment #gta_assemblyIntroduction
In this section, we will introduce what is a genome assembly, how it works, and the metrics to evaluate the quality of an assembly.
| Lesson | Slides | Hands-on | Recordings |
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An introduction to get started in genome assembly and annotation
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| ERGA post-assembly QC | |||
Genome Assembly
In this section, we will present genome assemblies for different types of organisms.
Non-nuclear genome assembly
When sequencing organisms with non-nuclear DNA, the data contain sequencing for both nuclear and non-nuclear DNA. In this section we will learn how to assemble organelles genome.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
| Mitochondrial Genome Assembly |
Tutorial (will come soon) |
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| Chloroplast genome assembly | |||
Assembly decontamination
In this section we will learn how remove sequences that do not belong to the organism you want to sequence.
| Lesson | Slides | Hands-on | Recordings |
|---|---|---|---|
| Assembly decontamination |
Tutorial (will come soon) |
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