Genome Annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
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Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Introduction
Start here if you are new to genome annotation in Galaxy.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
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Introduction to Genome Annotation
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Prokaryotes
Annotation of prokaryotic genomes.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Bacterial Genome Annotation | |||||
| Genome annotation with Prokka | |||||
| Identification of AMR genes in an assembled bacterial genome | |||||
| Refining Genome Annotations with Apollo (prokaryotes) | |||||
| Essential genes detection with Transposon insertion sequencing |
Eukaryotes
Annotation of eukaryotic genomes.
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| From small to large-scale genome comparison | |||||
| Comparative gene analysis in unannotated genomes |
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Editorial Board
This material is reviewed by our Editorial Board:
Helena Rasche
Simon Gladman
Anthony Bretaudeau
Contributors
This material was contributed to by:
Twishi Gulati
Paul Zierep
Simon Gladman
Jonathan Kreplak
Delphine Lariviere
Maria Doyle
Miaomiao Zhou
Stéphanie Robin
Anika Erxleben
Erwan Corre
Saskia Hiltemann
Helena Rasche
Mateo Boudet
Esteban Perez-Wohlfeil
Alexandre Cormier
Laura Leroi
Romane LIBOUBAN
Felicitas Kindel
Torsten Seemann
Anton Nekrutenko
Bérénice Batut
Björn Grüning
Bazante Sanders
Nathan Dunn
Anna Syme
Kenji Fujihara
Anthony Bretaudeau
Funding
These individuals or organisations provided funding support for the development of this resource
