Workflows

These workflows are associated with Galaxy Basics for everyone

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

GTN Training: Galaxy 101 For Everyone

Last updated Mar 14, 2022

Launch in Tutorial Mode question
License: None Specified, defaults to CC-BY-4.0
Tests: ✅ Results: Not yet automated

flowchart TD
  0["ℹ️ Input Dataset\niris"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["Convert CSV to tabular"];
  0 -->|output| 1;
  2["Datamash"];
  1 -->|tabular| 2;
  254f1b4b-d466-4f0e-8c46-0e97bbedae4d["Output\ndatamash_output"];
  2 --> 254f1b4b-d466-4f0e-8c46-0e97bbedae4d;
  style 254f1b4b-d466-4f0e-8c46-0e97bbedae4d stroke:#2c3143,stroke-width:4px;
  3["Remove beginning"];
  1 -->|tabular| 3;
  4["Cut"];
  3 -->|out_file1| 4;
  5["Group"];
  3 -->|out_file1| 5;
  a689bddf-14d0-4a72-b1f9-c34d8f50d2b3["Output\ngroup1"];
  5 --> a689bddf-14d0-4a72-b1f9-c34d8f50d2b3;
  style a689bddf-14d0-4a72-b1f9-c34d8f50d2b3 stroke:#2c3143,stroke-width:4px;
  6["Group"];
  3 -->|out_file1| 6;
  ac7c73b2-58dd-4c6e-85ce-ddf49323b206["Output\ngroup2"];
  6 --> ac7c73b2-58dd-4c6e-85ce-ddf49323b206;
  style ac7c73b2-58dd-4c6e-85ce-ddf49323b206 stroke:#2c3143,stroke-width:4px;
  7["Scatterplot with ggplot2"];
  3 -->|out_file1| 7;
  8["Scatterplot with ggplot2"];
  3 -->|out_file1| 8;
  9["Unique"];
  4 -->|out_file1| 9;
  8a2b5e30-d42a-4019-9674-4b4af00c820a["Output\nunique_output"];
  9 --> 8a2b5e30-d42a-4019-9674-4b4af00c820a;
  style 8a2b5e30-d42a-4019-9674-4b4af00c820a stroke:#2c3143,stroke-width:4px;

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!

Hands-on: Importing a workflow

Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.

Click on galaxy-upload Import at the top-right of the screen

Provide your workflow

Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”

Option 2: Upload the workflow file in the box labelled “Archived Workflow File”

Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Video: Importing a workflow from URL