Workflows

These workflows are associated with Galaxy Basics for genomics

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Find exons with the highest number of features
Anton Nekrutenko, Helena Rasche

Last updated Mar 21, 2024

Launch in Tutorial Mode
License: CC-BY-4.0
Tests: ✅ Results:

Download Galaxy Workflow.ga Galaxy Main Galaxy France Galaxy Australia Galaxy Europe Import to another server (≥23.0+ only!) 
flowchart TD
  0["ℹ️ Input Dataset\nExons"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["ℹ️ Input Dataset\nFeatures"];
  style 1 stroke:#2c3143,stroke-width:4px;
  2["bedtools Intersect intervals"];
  0 -->|output| 2;
  1 -->|output| 2;
  3["Datamash"];
  2 -->|output| 3;
  4["Sort"];
  3 -->|out_file| 4;
  5["Select first"];
  4 -->|outfile| 5;
  6["Compare two Datasets"];
  0 -->|output| 6;
  5 -->|outfile| 6;
  565e3d76-0230-4a5e-87c1-9c36ce0b7df8["Output\ntop_5_exons"];
  6 --> 565e3d76-0230-4a5e-87c1-9c36ce0b7df8;
  style 565e3d76-0230-4a5e-87c1-9c36ce0b7df8 stroke:#2c3143,stroke-width:4px;

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Video: Importing a workflow from URL