Plants

Set of tutorials from various topics that use plant datasets for analysis

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Chloroplast genome assembly
plants nanopore jbrowse1
ERGA post-assembly QC
plants animals genome assembly QC
Large genome assembly and polishing
assembly polishing nanopore plants

FAIR Data, Workflows, and Research

Lesson Slides Hands-on Recordings Input dataset Workflows
DataPLANT ARCs
plants fair data stewardship

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
From small to large-scale genome comparison
plants prokaryote

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
16S Microbial analysis with Nanopore data
metabarcoding 16S nanopore microgalaxy plants

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
NCBI BLAST+ against the MAdLand
plants

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Analysis of plant scRNA-Seq Data with Scanpy
plants paper-replication

Transcriptomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Whole transcriptome analysis of Arabidopsis thaliana
miRNA plants stress tolerance

Editorial Board

This material is reviewed by our Editorial Board:

Deepti Varshney avatar Deepti Varshneyorcid logoSaskia Hiltemann avatar Saskia Hiltemann

Contributors

This material was contributed to by:

Fabian Recktenwald avatar Fabian Recktenwaldorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoSabrina Zander avatar Sabrina Zanderorcid logoKevin Frey avatar Kevin FreyStella Eggels avatar Stella Eggelsorcid logoTom Brown avatar Tom Brownorcid logoMartin Kuhl avatar Martin KuhlEsteban Perez-Wohlfeil avatar Esteban Perez-Wohlfeilorcid logoAnna Syme avatar Anna Symeorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoCristina Martins Rodrigues avatar Cristina Martins Rodriguesorcid logoCristóbal Gallardo avatar Cristóbal GallardoMehmet Tekman avatar Mehmet Tekmanorcid logoDominik Brilhaus avatar Dominik Brilhausorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoPavankumar Videm avatar Pavankumar VidemDeepti Varshney avatar Deepti Varshney

Funding

These individuals or organisations provided funding support for the development of this resource

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DataPLANT
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MAdLand