Workflows

These workflows are associated with metaQuantome 3: Taxonomy

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

metaquantome-taxonomy-workflow

Last updated Nov 11, 2021

Launch in Tutorial Mode question
License: None Specified, defaults to CC-BY-4.0
Tests: ❌ Results: Not yet automated

flowchart TD
  0["metaQuantome: create samples file"];
  1["ℹ️ Input Dataset\nTaxa"];
  style 1 stroke:#2c3143,stroke-width:4px;
  2["ℹ️ Input Dataset\nIntensity"];
  style 2 stroke:#2c3143,stroke-width:4px;
  3["metaQuantome: database"];
  4["metaQuantome: expand"];
  3 -->|outfile| 4;
  2 -->|output| 4;
  1 -->|output| 4;
  0 -->|samples_file| 4;
  5["metaQuantome: filter"];
  4 -->|outfile| 5;
  0 -->|samples_file| 5;
  6["metaQuantome: stat"];
  5 -->|outfile| 6;
  0 -->|samples_file| 6;
  7["T2-Bar-Plot"];
  6 -->|outfile| 7;
  0 -->|samples_file| 7;
  8["T7-T2_volcano-plot"];
  6 -->|outfile| 8;
  0 -->|samples_file| 8;
  9["T4-Bar-Plot"];
  6 -->|outfile| 9;
  0 -->|samples_file| 9;
  10["T7-Bar-Plot"];
  6 -->|outfile| 10;
  0 -->|samples_file| 10;
  11["T4-T2_volcano-plot"];
  6 -->|outfile| 11;
  0 -->|samples_file| 11;

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!

Hands-on: Importing a workflow

Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.

Click on galaxy-upload Import at the top-right of the screen

Provide your workflow

Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”

Option 2: Upload the workflow file in the box labelled “Archived Workflow File”

Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Video: Importing a workflow from URL