Workflows

These workflows are associated with Deep Learning (Part 3) - Convolutional neural networks (CNN)

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Intro_To_CNN_v1.0.11.0
Kaivan Kamali

Last updated Dec 11, 2023

Launch in Tutorial Mode
License: CC-BY-4.0
Tests: ✅ Results: Not yet automated

Download Galaxy Workflow.ga Galaxy Australia Galaxy Main Galaxy France Galaxy Europe Import to another server (≥23.0+ only!) 
flowchart TD
  0["ℹ️ Input Dataset\nX_test"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["ℹ️ Input Dataset\nX_train"];
  style 1 stroke:#2c3143,stroke-width:4px;
  2["ℹ️ Input Dataset\ny_test"];
  style 2 stroke:#2c3143,stroke-width:4px;
  3["ℹ️ Input Dataset\ny_train"];
  style 3 stroke:#2c3143,stroke-width:4px;
  4["Create a deep learning model architecture"];
  5["To categorical"];
  3 -->|output| 5;
  6["Create deep learning model"];
  4 -->|outfile| 6;
  7["Deep learning training and evaluation"];
  6 -->|outfile| 7;
  1 -->|output| 7;
  5 -->|outfile| 7;
  8["Model Prediction"];
  7 -->|outfile_object| 8;
  0 -->|output| 8;
  9["Machine Learning Visualization Extension"];
  8 -->|outfile_predict| 9;
  2 -->|output| 9;

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
  • Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure:

Video: Importing a workflow from URL