Workflows

These workflows are associated with Age prediction using machine learning

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

flowchart TD
  0["Pipeline Builder"];
  1["ℹ️ Input Dataset\ntrain_dataset"];
  style 1 stroke:#2c3143,stroke-width:4px;
  2["ℹ️ Input Dataset\ntest_dataset"];
  style 2 stroke:#2c3143,stroke-width:4px;
  3["ℹ️ Input Dataset\ntest_labels_dataset"];
  style 3 stroke:#2c3143,stroke-width:4px;
  4["Hyperparameter Search"];
  0 -->|outfile_params| 4;
  0 -->|outfile| 4;
  1 -->|output| 4;
  1 -->|output| 4;
  5["Ensemble methods"];
  2 -->|output| 5;
  4 -->|outfile_object| 5;
  6["Plot actual vs predicted curves and residual plots"];
  5 -->|outfile_predict| 6;
  3 -->|output| 6;
	

flowchart TD
  0["Pipeline Builder"];
  1["ℹ️ Input Dataset\nInput dataset"];
  style 1 stroke:#2c3143,stroke-width:4px;
  2["Hyperparameter Search"];
  0 -->|outfile_params| 2;
  0 -->|outfile| 2;
  1 -->|output| 2;
  1 -->|output| 2;
  3["Parallel Coordinates Plot"];
  2 -->|outfile_result| 3;
	

Importing into Galaxy

Hands-on: Importing a workflow

• Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
• Click on galaxy-upload Import at the top-right of the screen
• Provide your workflow
  • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
  • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
• Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure: