Workflows

These workflows are associated with Machine learning: classification and regression

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

flowchart TD
  0["ℹ️ Input Dataset\nbreast-w_train"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["ℹ️ Input Dataset\nbreast-w_targets"];
  style 1 stroke:#2c3143,stroke-width:4px;
  2["ℹ️ Input Dataset\nbreast-w_test"];
  style 2 stroke:#2c3143,stroke-width:4px;
  3["Support vector machines SVMs"];
  0 -->|output| 3;
  0 -->|output| 3;
  4["Support vector machines SVMs"];
  2 -->|output| 4;
  3 -->|outfile_fit| 4;
  5["Plot confusion matrix, precision, recall and ROC and AUC curves"];
  3 -->|outfile_fit| 5;
  4 -->|outfile_predict| 5;
  1 -->|output| 5;
  0fac82f3-c1b2-482f-a31f-30b623a0f223["Output\noutput_roc"];
  5 --> 0fac82f3-c1b2-482f-a31f-30b623a0f223;
  style 0fac82f3-c1b2-482f-a31f-30b623a0f223 stroke:#2c3143,stroke-width:4px;
  431f3596-7b80-44f0-83ee-dda8c58e1e8c["Output\noutput_confusion"];
  5 --> 431f3596-7b80-44f0-83ee-dda8c58e1e8c;
  style 431f3596-7b80-44f0-83ee-dda8c58e1e8c stroke:#2c3143,stroke-width:4px;
  ab62de11-fa69-4d59-9ebe-d5d0562f3c18["Output\noutput_prf"];
  5 --> ab62de11-fa69-4d59-9ebe-d5d0562f3c18;
  style ab62de11-fa69-4d59-9ebe-d5d0562f3c18 stroke:#2c3143,stroke-width:4px;
	

flowchart TD
  0["ℹ️ Input Dataset\nbody_fat_test"];
  style 0 stroke:#2c3143,stroke-width:4px;
  1["ℹ️ Input Dataset\nbody_fat_train"];
  style 1 stroke:#2c3143,stroke-width:4px;
  2["ℹ️ Input Dataset\nbody_fat_test_labels"];
  style 2 stroke:#2c3143,stroke-width:4px;
  3["Ensemble methods"];
  1 -->|output| 3;
  1 -->|output| 3;
  4["Ensemble methods"];
  0 -->|output| 4;
  3 -->|outfile_fit| 4;
  5["Plot actual vs predicted curves and residual plots"];
  4 -->|outfile_predict| 5;
  2 -->|output| 5;
  cf1a5f94-f79d-4d13-b142-c3e20e25b658["Output\noutput_scatter_plot"];
  5 --> cf1a5f94-f79d-4d13-b142-c3e20e25b658;
  style cf1a5f94-f79d-4d13-b142-c3e20e25b658 stroke:#2c3143,stroke-width:4px;
  e86ba3fd-3f85-4ba9-ad66-4c1e5caa875a["Output\noutput_actual_vs_pred"];
  5 --> e86ba3fd-3f85-4ba9-ad66-4c1e5caa875a;
  style e86ba3fd-3f85-4ba9-ad66-4c1e5caa875a stroke:#2c3143,stroke-width:4px;
  2cbc04d3-d2d9-4623-b63d-51f1b024d611["Output\noutput_residual_plot"];
  5 --> 2cbc04d3-d2d9-4623-b63d-51f1b024d611;
  style 2cbc04d3-d2d9-4623-b63d-51f1b024d611 stroke:#2c3143,stroke-width:4px;
	

Importing into Galaxy

Hands-on: Importing a workflow

• Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
• Click on galaxy-upload Import at the top-right of the screen
• Provide your workflow
  • Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
  • Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
• Click the Import workflow button

Below is a short video demonstrating how to import a workflow from GitHub using this procedure: