Faster Download and Extract Reads in FASTQ: format from NCBI SRA
toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.8+galaxy13.0.8+galaxy1
Metadata
Servers Offering this Tool
UseGalaxy.eu (3.0.8+galaxy1)This is a guess, we are not currently checking if that is actually present.
Observed Tool Versions
Within GTN tutorials
- 3.0.8+galaxy1
- 3.0.3+galaxy0
- 2.11.0+galaxy0
- 2.10.9+galaxy0
- 2.10.8+galaxy0
- 2.10.7+galaxy1
- 2.10.4+galaxy1
EDAM Operations
EDAM Topics
Relevant Tutorials
- Assembly / Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
- Using Galaxy and Managing your Data / SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
- Introduction to Galaxy Analyses / NGS data logistics
- Transcriptomics / Pathway analysis with the MINERVA Platform
- Variant Analysis / From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis