Florian Heyl

Former Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Epigenetics
• Transcriptomics

Tutorials

• Epigenetics / ATAC-Seq data analysis
• Epigenetics / CUT&RUN data analysis ✍️
• Transcriptomics / CLIP-Seq data analysis from pre-processing to motif detection

Slides

• Epigenetics / Introduction to ATAC-Seq data analysis

FAQs

• Automatically trim adapters (without providing custom sequences)
• In bowtie 2 parameters, in place of 1000 for other experiments, should we mention the median fragment length observed in our library?
• Changing the heatmap colours
• When I get a warning for base per sequence content, what should I do?
• UCSC import: what should my file look like?

Video Recordings

• Sequence analysis / Quality Control 🗣
• Epigenetics / ATAC-Seq data analysis 🗣
• Sequence analysis / Quality Control 🗣

GitHub Activity

github Issues Reported

7 Merged Pull Requests

See all of the github Pull Requests and github Commits by Florian Heyl.

• New CUT&RUN tutorial with Workflow for Training and Workflow for a bigger data analysis
  work-in-progress
  epigenetics
• Adding ATAC-Seq slides
  epigenetics
• Clipseq Training material patch
  transcriptomics
• Training clipseq new version
  transcriptomics
• Changes to CLIP-Seq tutorial
  transcriptomics

Reviewed 4 PRs

We love our community reviewing each other's work!

• New CUT&RUN tutorial with Workflow for Training and Workflow for a bigger data analysis
  work-in-progress
  epigenetics
• Adding ATAC-Seq slides
  epigenetics
• Changes to CLIP-Seq tutorial
  transcriptomics
• Chip -seq tutorial sep.2018

External Links

Favourite Topics

Favourite Formats