Marius van den Beek

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Tutorials

• Galaxy Server administration / Performant Uploads with TUS
• Galaxy Server administration / Monitoring Galaxy and Pulsar with Sentry ✍️
• Galaxy Server administration / Running Jobs on Remote Resources with Pulsar
• Galaxy Server administration / Galaxy Installation with Ansible 📝
• Galaxy Server administration / Use Apptainer containers for running Galaxy jobs
• Introduction to Galaxy Analyses / NGS data logistics ✍️
• Variant Analysis / From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis ✍️
• Using Galaxy and Managing your Data / Group tags for complex experimental designs
• Using Galaxy and Managing your Data / Creating, Editing and Importing Galaxy Workflows
• Using Galaxy and Managing your Data / Using Workflow Parameters
• Using Galaxy and Managing your Data / Workflow Reports 🖥
• Foundations of Data Science / Python - Type annotations 📝

Slides

• Galaxy Server administration / Running Jobs on Remote Resources with Pulsar
• Galaxy Server administration / Galaxy Tool Management with Ephemeris

FAQs

• Debugging Memory Leaks

Video Recordings

• Using Galaxy and Managing your Data / Using Workflow Parameters 💬 🗣

Events

• 2023 Galaxy Admin Training (Ghent) 🧑‍🏫

GitHub Activity

github Issues Reported

30 Merged Pull Requests

See all of the github Pull Requests and github Commits by Marius van den Beek.

• Drop help@galaxyproject.org from US help
  faqs
• Fix workflow parameter tutorial for updated Add_a_column1 tool
  galaxy-interface
• Minor sentry tutorial tweaks
  admin
• Use ``File.exist``, fixes GTN local build
  template-and-tools
• Add Sentry tutorial
  admin
  template-and-tools

Reviewed 32 PRs

We love our community reviewing each other's work!

• Update Reference-based RNA-Seq data analysis
  transcriptomics
• Long vgp tutorial edits
  assembly
• add FAQ about upgrading through 22.05
  admin
• Add python memory leak debugging faq
  admin
• Add Sentry tutorial
  admin
  template-and-tools

External Links

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