Nicola Soranzo

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Tutorials

• Galaxy Server administration / Galaxy Installation with Ansible 📝
• Galaxy Server administration / External Authentication
• Galaxy Server administration / Galaxy Tool Management with Ephemeris
• Development in Galaxy / Scripting Galaxy using the API and BioBlend ✍️
• Single Cell / Single-cell quality control with scater
• Transcriptomics / Reference-based RNA-Seq data analysis ✍️
• Introduction to Galaxy Analyses / From peaks to genes ✍️
• Introduction to Galaxy Analyses / Galaxy Basics for genomics ✍️
• Introduction to Galaxy Analyses / A short introduction to Galaxy ✍️
• Variant Analysis / Calling variants in diploid systems
• FAIR Data, Workflows, and Research / Persistent Identifiers ✍️
• FAIR Data, Workflows, and Research / Data Registration ✍️
• FAIR Data, Workflows, and Research / FAIR and its Origins ✍️
• FAIR Data, Workflows, and Research / Metadata ✍️
• FAIR Data, Workflows, and Research / Access ✍️

Slides

• Galaxy Server administration / Galactic Database
• Galaxy Server administration / External Authentication
• Galaxy Server administration / Galaxy Tool Management with Ephemeris
• Galaxy Server administration / Connecting Galaxy to a compute cluster ✍️
• Development in Galaxy / Tool Dependencies and Conda
• Development in Galaxy / Scripting Galaxy using the API and BioBlend
• Development in Galaxy / Tool development and integration into Galaxy
• Introduction to Galaxy Analyses / Options for using Galaxy
• Introduction to Galaxy Analyses / A Short Introduction to Galaxy
• Introduction to Galaxy Analyses / Introduction to Galaxy
• Introduction to Galaxy Analyses / Una breve introducción a Galaxy

FAQs

• How do I know what I can do with a role? What variables are available?
• Contributing a Jupyter Notebook to the GTN
• Changing the datatype
• Detecting the datatype (file format)
• Importing data from a data library
• Importing data from remote files
• Renaming a dataset
• Creating a new history
• Créer un nouvel history
• Opening the workflow editor
• Extracting a workflow from your history

Events

• 2023 Galaxy Admin Training (Ghent) 🧑‍🏫

GitHub Activity

github Issues Reported

98 Merged Pull Requests

See all of the github Pull Requests and github Commits by Nicola Soranzo.

• Add affiliation and social ids for myself
  template-and-tools
• Fixes for the "Basics of machine learning" tutorial
  statistics
• Small fixes to Intro short tutorial
  introduction
  faqs
• Update tool integration slides
  dev
  template-and-tools
• Git-related improvements to Ansible-galaxy tutorial
  admin

Reviewed 203 PRs

We love our community reviewing each other's work!

• Git-related improvements to Ansible-galaxy tutorial
  admin
• Update data library slides
  admin
• Break redirects to plain text slides
  template-and-tools
• Add ipynb faq
• Update CoC to point to official Galaxy version

External Links

Favourite Topics

Favourite Formats