Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

For any question or discussions related to this topic, or to connect with others in the community, please visit the community chat:

  Community Matrix Chat

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Creation of an interactive Galaxy tools table for your community
Community SIG
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

Follow topic updates with our RSS Feed

Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena Rasche

Contributors

This material was contributed to by:

Cyril Monjeaud avatar Cyril MonjeaudDave B. avatar Dave B.orcid logoMartin Čech avatar Martin Čechorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoYvan Le Bras avatar Yvan Le BrasAysam Guerler avatar Aysam Guerlerorcid logoJohn Davis avatar John Davisorcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoBérénice Batut avatar Bérénice Batutorcid logoClemens Blank avatar Clemens Blankorcid logoPaul Zierep avatar Paul ZierepLoraine Guéguen avatar Loraine GuéguenYouri Hoogstrate avatar Youri Hoogstrateorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoCameron Hyde avatar Cameron HydeHervé Ménager avatar Hervé MénagerNitesh Turaga avatar Nitesh TuragaStéphanie Legras avatar Stéphanie Legrasorcid logoWendi Bacon avatar Wendi BaconErik Schill avatar Erik SchillRoss Lazarus avatar Ross LazarusClare Sloggett avatar Clare Sloggettorcid logoSaskia Hiltemann avatar Saskia HiltemannLain Pavot avatar Lain PavotDannon Baker avatar Dannon BakerGildas Le Corguillé avatar Gildas Le CorguilléSimon Bray avatar Simon Brayorcid logoJohn Chilton avatar John ChiltonEstelle Ancelet avatar Estelle Anceletorcid logoHelena Rasche avatar Helena Rascheorcid logoAlex Ostrovsky avatar Alex OstrovskyAssunta DeSanto avatar Assunta DeSantoorcid logoBjörn Grüning avatar Björn GrüningMatthias Bernt avatar Matthias Berntorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuru

Funding

These individuals or organisations provided funding support for the development of this resource