Björn Grüning

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• Galaxy Server administration
• Computational chemistry
• Contributing to the Galaxy Training Material
• Proteomics
• Variant Analysis

Tutorials

• Proteomics / Secretome Prediction
• Proteomics / Peptide and Protein ID using OpenMS tools
• Proteomics / Protein FASTA Database Handling
• Proteomics / Detection and quantitation of N-termini (degradomics) via N-TAILS
• Proteomics / Peptide and Protein ID using SearchGUI and PeptideShaker
• Proteomics / Peptide and Protein Quantification via Stable Isotope Labelling (SIL)
• Proteomics / Mass spectrometry imaging: Loading and exploring MSI data
• Proteomics / Label-free versus Labelled - How to Choose Your Quantitation Method
• Galaxy Server administration / Mapping Jobs to Destinations using TPV ✍️
• Galaxy Server administration / Galaxy Monitoring with Reports
• Galaxy Server administration / Galaxy Database schema
• Galaxy Server administration / Connecting Galaxy to a compute cluster
• Development in Galaxy / Galaxy Webhooks
• Development in Galaxy / JavaScript plugins
• Computational chemistry / High Throughput Molecular Dynamics and Analysis
• Contributing to the Galaxy Training Material / Creating Interactive Galaxy Tours
• Contributing to the Galaxy Training Material / Tools, Data, and Workflows for tutorials
• Contributing to the Galaxy Training Material / Running the GTN website locally using the command line
• Contributing to the Galaxy Training Material / Creating content in Markdown 📝
• Single Cell / Single-cell ATAC-seq standard processing with SnapATAC2 📝
• Single Cell / GO Enrichment Analysis on Single-Cell RNA-Seq Data 📝
• Transcriptomics / Pathway analysis with the MINERVA Platform 🖥
• Introduction to Galaxy Analyses / From peaks to genes ✍️
• Introduction to Galaxy Analyses / Galaxy Basics for genomics ✍️
• Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease
• Using Galaxy and Managing your Data / Understanding Galaxy history system 📝
• Genome Annotation / Genome Annotation ✍️
• Teaching and Hosting Galaxy training / Running a workshop as instructor

Slides

• Galaxy Server administration / Galaxy Monitoring with gxadmin
• Galaxy Server administration / Advanced customisation of a Galaxy instance
• Galaxy Server administration / Server Maintenance: Cleanup, Backup, and Restoration
• Galaxy Server administration / User, Role, Group, Quota, and Authentication managment ✍️
• Galaxy Server administration / Galaxy Monitoring
• Galaxy Server administration / Galaxy Monitoring with Telegraf and Grafana
• Galaxy Server administration / Docker and Galaxy
• Galaxy Server administration / Galaxy from an administrator's point of view
• Galaxy Server administration / Server: Other
• Galaxy Server administration / Connecting Galaxy to a compute cluster ✍️
• Development in Galaxy / Galaxy Interactive Tours
• Development in Galaxy / Tool Dependencies and Conda
• Development in Galaxy / Tool Dependencies and Containers
• Development in Galaxy / Galaxy Webhooks
• Development in Galaxy / Tool development and integration into Galaxy
• Development in Galaxy / Galaxy Code Architecture
• Development in Galaxy / Galaxy Interactive Environments
• Development in Galaxy / Visualizations: JavaScript Plugins

FAQs

• Failing all jobs from a specific user
• Mapping Jobs to Specific Storage By User

Events

• 2023 Galaxy Admin Training (Ghent) 🎪
• Galaxy Training Academy 2024 🧑‍🏫

GitHub Activity

github Issues Reported

62 Merged Pull Requests

See all of the github Pull Requests and github Commits by Björn Grüning.

• tiny edits to LOTUS2
  microbiome
• adds the missing workflow-hub icon
  template-and-tools
• Add ELIXIR and a few other affiliations
  template-and-tools
• fix build
  proteomics
• adding uni-freiburg affi
  template-and-tools

Reviewed 912 PRs

We love our community reviewing each other's work!

• Update GitHub Actions Workflow for workflowhub
  template-and-tools
• Update GitHub Actions Workflow for Image Optimization
  template-and-tools
• add registration link to SPOC CoFest
  template-and-tools
• [BHEU2024] Update the "Introduction to image analysis using Galaxy" and "HeLa screen analysis" tutorials
  imaging
• Fix FAQ format
  single-cell

News

External Links

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